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next generation sequencing data  (Biotechnology Information)

 
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    Biotechnology Information next generation sequencing data
    Next Generation Sequencing Data, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/next-generation+sequencing+data/data+genome+sequencing+whole/pm41095186-151-2-13
    Average 86 stars, based on 1 article reviews
    next generation sequencing data - by Bioz Stars, 2026-10
    86/100 stars

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    Related Articles

    Next-Generation Sequencing:

    Article Title: EIF3D safeguards the homeostasis of key signaling pathways in human primed pluripotency
    Article Snippet: .. The next-generation sequencing data are available on the National Center for Biotechnology Information Gene Expression Omnibus (NCBI GEO) under accession number GSE248820 (GSE248702, GSE248819, GSE249190, and GSE249191). ..

    Article Title: CD154:CD11b blockade enhances CD8+ T cell differentiation during infection but not transplantation.
    Article Snippet: .. Next-generation sequencing data have been deposited in the NIH/National Center for Biotechnology Information Gene Expression Omnibus public database and assigned the accession number GSE293467. ..

    Article Title: Bahcc1 is critical for the aberrant epigenetic program in a mouse model of MLL-ENL– mediated leukemia
    Article Snippet: .. Next-generation sequencing data were deposited to the National Center for Biotechnology Information Gene Expression Omnibus under accession number GSE229484. ..

    Article Title: Development of Genome-Wide Insertion and Deletion Polymorphism Markers from Next-Generation Sequencing Data in Rice
    Article Snippet: .. Based on the next-generation sequencing data from 1765 rice varieties, a total of 7,100,998,643 publicly sequenced reads were downloaded from the NCBI (National Center for Biotechnology Information) website, with an average length of 86.56 bp; the sequencing depth ranged from 0.03× (GP133) to 118.42× (Oryza-brachyantha), with an average depth of 1.89× (Additional file : Table S1). ..

    Article Title: EIF3D safeguards the homeostasis of key signaling pathways in human primed pluripotency.
    Article Snippet: .. Additional data are available in the main text or the Supplementary Materials or are deposited as follows: Uncropped Wes data, fluorescence images, flow cytometry data, and the numerical data and statistical results are deposited in dryad (https://doi.org/10.5061/dryad.kkwh70sb6). the next- generation sequencing data are available on the national center for Biotechnology information Gene expression Omnibus (ncBi GeO) under accession number GSe248820 (GSe248702, GSe248819, GSe249190, and GSe249191). ..

    Article Title: The lncRNA PILA promotes NF-κB signaling in osteoarthritis by stimulating the activity of the protein arginine methyltransferase PRMT1.
    Article Snippet: Inflammatory cytokine–induced activation of nuclear factor B (NF- B) signaling plays a critical role in the pathogenesis of osteoarthritis (OA).. We identified PILA as a long noncoding RNA (lncRNA) that enhances NF- B signaling and OA.. The abundance of PILA was increased in damaged cartilage from patients with OA and in human articular chondrocytes stimulated with the proinflammatory cytokine tumor necrosis factor (TNF).

    Gene Expression:

    Article Title: EIF3D safeguards the homeostasis of key signaling pathways in human primed pluripotency
    Article Snippet: .. The next-generation sequencing data are available on the National Center for Biotechnology Information Gene Expression Omnibus (NCBI GEO) under accession number GSE248820 (GSE248702, GSE248819, GSE249190, and GSE249191). ..

    Article Title: CD154:CD11b blockade enhances CD8+ T cell differentiation during infection but not transplantation.
    Article Snippet: .. Next-generation sequencing data have been deposited in the NIH/National Center for Biotechnology Information Gene Expression Omnibus public database and assigned the accession number GSE293467. ..

    Article Title: Bahcc1 is critical for the aberrant epigenetic program in a mouse model of MLL-ENL– mediated leukemia
    Article Snippet: .. Next-generation sequencing data were deposited to the National Center for Biotechnology Information Gene Expression Omnibus under accession number GSE229484. ..

    Article Title: EIF3D safeguards the homeostasis of key signaling pathways in human primed pluripotency.
    Article Snippet: .. Additional data are available in the main text or the Supplementary Materials or are deposited as follows: Uncropped Wes data, fluorescence images, flow cytometry data, and the numerical data and statistical results are deposited in dryad (https://doi.org/10.5061/dryad.kkwh70sb6). the next- generation sequencing data are available on the national center for Biotechnology information Gene expression Omnibus (ncBi GeO) under accession number GSe248820 (GSe248702, GSe248819, GSe249190, and GSe249191). ..

    Sequencing:

    Article Title: Development of Genome-Wide Insertion and Deletion Polymorphism Markers from Next-Generation Sequencing Data in Rice
    Article Snippet: .. Based on the next-generation sequencing data from 1765 rice varieties, a total of 7,100,998,643 publicly sequenced reads were downloaded from the NCBI (National Center for Biotechnology Information) website, with an average length of 86.56 bp; the sequencing depth ranged from 0.03× (GP133) to 118.42× (Oryza-brachyantha), with an average depth of 1.89× (Additional file : Table S1). ..

    Fluorescence:

    Article Title: EIF3D safeguards the homeostasis of key signaling pathways in human primed pluripotency.
    Article Snippet: .. Additional data are available in the main text or the Supplementary Materials or are deposited as follows: Uncropped Wes data, fluorescence images, flow cytometry data, and the numerical data and statistical results are deposited in dryad (https://doi.org/10.5061/dryad.kkwh70sb6). the next- generation sequencing data are available on the national center for Biotechnology information Gene expression Omnibus (ncBi GeO) under accession number GSe248820 (GSe248702, GSe248819, GSe249190, and GSe249191). ..

    Flow Cytometry:

    Article Title: EIF3D safeguards the homeostasis of key signaling pathways in human primed pluripotency.
    Article Snippet: .. Additional data are available in the main text or the Supplementary Materials or are deposited as follows: Uncropped Wes data, fluorescence images, flow cytometry data, and the numerical data and statistical results are deposited in dryad (https://doi.org/10.5061/dryad.kkwh70sb6). the next- generation sequencing data are available on the national center for Biotechnology information Gene expression Omnibus (ncBi GeO) under accession number GSe248820 (GSe248702, GSe248819, GSe249190, and GSe249191). ..

    other:

    Article Title: Association of single-nucleotide polymorphisms in dual specificity phosphatase 8 and insulin-like growth factor 2 genes with inosine-5′-monophosphate, inosine, and hypoxanthine contents in chickens
    Article Snippet: The next-generation sequencing (NGS) data for the KNCs was provided by the National Agricultural Biotechnology Information Center (NABIC), Jeonju, Korea to identify SNPs in the DUSP8 gene of the KNC-R line.



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    Data preprocessing workflow. When analyzing NGS datasets with KPop, one can optionally pre-process sequencing reads in order to eliminate biases and/or have the method focus on specific parts of the genome. For instance, one might align reads to a (pan-)genome and separate them into reads that align (likely to originate from the organism being studied) and reads that do not (likely to come from contaminations). Furthermore, reads that do map to the pan-genome might be separated into groups specific to different genomic features; for instance, one might align them to a set of MLST genes or AMR genes. Full k -mer spectra would then be separately obtained from each group of reads (contaminations, pan-genomic, MLST genes, AMR genes) and given as input to downstream/classification methods. The choice of the group of reads from which spectra are computed determines the set of sequences seen by the method, and hence the scope of the classification

    Journal: Genome Biology

    Article Title: KPop: accurate and scalable comparative analysis of microbial genomes by sequence embeddings

    doi: 10.1186/s13059-025-03585-8

    Figure Lengend Snippet: Data preprocessing workflow. When analyzing NGS datasets with KPop, one can optionally pre-process sequencing reads in order to eliminate biases and/or have the method focus on specific parts of the genome. For instance, one might align reads to a (pan-)genome and separate them into reads that align (likely to originate from the organism being studied) and reads that do not (likely to come from contaminations). Furthermore, reads that do map to the pan-genome might be separated into groups specific to different genomic features; for instance, one might align them to a set of MLST genes or AMR genes. Full k -mer spectra would then be separately obtained from each group of reads (contaminations, pan-genomic, MLST genes, AMR genes) and given as input to downstream/classification methods. The choice of the group of reads from which spectra are computed determines the set of sequences seen by the method, and hence the scope of the classification

    Article Snippet: In order to do so, simulated next-generation sequencing (NGS) data was generated for each genome using ART [ ], emulating Illumina HiSeq 2500 paired-end reads of length 150 bp with an average coverage of 20-fold.

    Techniques: Sequencing